PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G307300.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 351aa    MW: 38687.1 Da    PI: 4.4056
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G307300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.3e-07445540
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         C+ +++++  ++C+++   lC +C  + H+       Ht++
  Sevir.1G307300.2.p  4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                        7*****************************657888889876 PP
2zf-B_box21.83.9e-074788540
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         C++++++++  +C + ++ lC++C  ++H        H+++
  Sevir.1G307300.2.p 47 LCDRCGSQPAAAHCIEENTSLCQNCDWNGHDAtsgatgHKRQ 88
                        7*****************************447778888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000216.45E-6447No hitNo description
PROSITE profilePS501199.1014390IPR000315B-box-type zinc finger
CDDcd000214.25E-54790No hitNo description
SMARTSM003360.0984890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAALCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPAAAHC  60
IEENTSLCQN CDWNGHDATS GATGHKRQAI NCYSGCPSSS ELSRIWSFVM DIPTVAAEPN  120
CEDGISMMTI DDSDVTNHCD ASDDKRLLEI ANTTLMSDPP TGDKLKPLIG SPSGDGFNIL  180
PLATDQPAGS DSMTPKVPYA TDDDKFNDGS MYEDLCVDDT DLTFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FEMKEMPPFD SNEEPKYMQL ECSNVVSADS AMSNQVLEIT KIVGYHQCSS  300
WVSHRGILLV LKVQLLEAAE IVLSHDTRRR RRDESLTRRS DMLLARLGQT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353980.0BT035398.1 Zea mays full-length cDNA clone ZM_BFb0059C10 mRNA, complete cds.
GenBankEU9722430.0EU972243.1 Zea mays clone 378354 zinc finger protein CONSTANS-LIKE 11 mRNA, complete cds.
GenBankKJ7268430.0KJ726843.1 Zea mays clone pUT3383 C2C2-CO-like transcription factor (COL14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953745.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
TrEMBLK3YSX90.0K3YSX9_SETIT; Uncharacterized protein
STRINGSi017374m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-72B-box type zinc finger protein with CCT domain